YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46109550, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQASSSHY PLHLTIRFST SQPDLELDIS SPQTTTVLAL KHLLRTRLSS RSRLRLIYQG  60
   61 RLLPDASALS SVLKAPPPPP RNLDDPKGKG KAVEGANVTR VYVNCSIGDE LTSEELDKEE 120
  121 EEALKPPQDV NGDDSKPTKS TRPRPRGFDR LLQSGITPSE IATLRTQFNS IHTAGFTPDA 180
  181 MPSPDSLRNM EDAWIDNNAD GLPSGSNPLE DENAGMASVM DVLIKAMIVG FFFPLGSLTW 240
  241 LLRQDGIWSK RWQIFVGFGV VLSLCIGFVM ELSGDRP

Type	Start	End	Confidence
Cytoplasmic	1	221	0.64
Transmembrane Helix	222	242	0.90
Non-Cytoplasmic	243	251	0.50
Transmembrane Helix	252	272	0.92
Cytoplasmic	273	277	0.49