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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42548023, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLKVATIPS QSPLDNPSSV PGVTPTTIQT RLDHAHSTRG GSASASLLDD TDPVPRQQYQ  60
   61 RDTTANTSEQ FELVDYPPIQ ARRDAADREA RRKEKRDEKR RWLQEQDEMK FSHSIQFNAV 120
  121 PDWSSHYIAY SNLKKLIYHL EKNAHQARGS TGDAESRPLI NQEDAEEVFS RALGVELEKI 180
  181 CSFYVSKEGE LLEEAAQLLR DVGDEAEDAI ADNRYLRRLS VSSANNRTGR NGFRSRSPRS 240
  241 RSSDNEESGS EEGDETTGLT TRRRSSGGRR RTIPSINKSR SEDLNASTDL GRDMRRLSTA 300
  301 ADENEENLMF SSGIFSSAIM LKKRIIGLYV SLCELKSFIQ LNRTGFTKVL KKFDKILDKE 360
  361 LKGPYLRAHV ETAYPFKDET KCMLEENIAK MEKAFAEIVT GGDEALARKD LRSHLREHVV 420
  421 WERNTVWRDL IGIERRAEAA GLGQALLGQE RGNVTRRLQG DEAKGAQITQ FRTPFGRVTL 480
  481 PPWLASSSLW TLIACFTVFA LLLLLPIMEK PEQQNCLAML VFVSLLWATE TIPLFVTSLL 540
  541 IPFLSVVLNV VRDETPGKPQ KRLGSKEATS AIFAAMWTPV IMLLLGGFTL AAALSKCTID 600
  601 KRLATLVLSK AGTQPKTVLI ANMFVAAFAS MLISNVAAPV LCYSIIEPML RTLPSDSNMS 660
  661 KAVIIGIALA SNIGGMLSPI ASPQNVVAMG IMQPAPTWLQ WFFIVIPVGT VSIVLIWLIL 720
  721 LVTFQPGKGT TIAPIRPVKE KFTALQWFVT IVTISTIALW CASHQLEAEF GDMGVIAIIP 780
  781 IVLFFGIGLL TKEDFNNFPW TIIILAAGGL SLGKAVRSSG LLHTLAEIVS EKVEGMSLYG 840
  841 VLVVFSTLIL VIATFISHTV AALIFLPLVF DVGAAMDQPH PNLLVMGGVL MCSAAMGLPT 900
  901 SGFPNMTQLP AVIGSSSLSF VSVLYMLMDY NVMREIFRGD GVLYSFELAG AMLSAFTARP 960
  961 IIELKQQTKA KIETILAHGD RVLVGLNNGA LRIYRLNGLV DPSLIGSADA DAAAATSPNG1020
 1021 ENGASPITKS SSPTDLMREV ERFSTRAIEQ LAIIKDANTI VSLSNYHVSF HDLKTYELIE1080
 1081 TLPRTKNATC FASTSNIVKD PDTGIPEIVS RLAVAVKRKL LLWSWLESEL SDDVDEIVLT1140
 1141 ESIRSVTWAS ATKLVCGLNG GYVMVNVVTR EIEDVVSPGS GPAAGQNSRF GAMSSAGMGY1200
 1201 MGLGGYMPKP LATKLAEGEI LLAKDINTLF IDDNGKPLDR RQIPWQHAPE SIGYSYPYIL1260
 1261 ALQAPSKGSL EVRNPSTLSS LQNLSLPGAA QLHFPPPTYS LAHAGKGFHI SSERCVWKMD1320
 1321 ATDYDSQIQE LVDGGHFDEA ISILEMLEDA LLRNKTQTLR EVKMLKAEGL FKKKKYRQAM1380
 1381 DLFNEDTVHA PPERVLKMFP PSIAGELSSW AGREDEESQE SDEAPATPKK ANGTRTTTPE1440
 1441 PSESPHDTPQ SSKGGFARYL TGSYRRPQAD TASIFSKKDT TDGDDTASVK EPDSADDQPL1500
 1501 KDKNLTNAVL ELNSYLAGTR ARLQRVLDPV TGKLKPRSER NGSTEEIAEN FLRIGLDESE1560
 1561 ELLQEELRNT FRLVDTTLFR AYMFSRPTLA SSLFRIPNFC DPNVVNEKLL EHNRYNELVD1620
 1621 FFYGKKLHKE ALELLRRFGA AEKPDDAAPA LHGPQRTIEY LKTLPPSEID LILEHAEWTL1680
 1681 KASPNAALEI FIGDTENAET LPREKIVSFI HDIDTQLECR YLEHIINELE DMTPDLHNRL1740
 1741 VELYVENLKD KEEHGEEWNE MMNRFVEFLR HEFLREPVQV YSLSKAFQLI PRDDPAFYEA1800
 1801 QAVVLSKMGQ HKQALEIYVF KMKDYQKAEQ YCNRVNATQD ATPSAQQNTK NDAGDDPEKT1860
 1861 TPSIYHTLLS LYLQPSSPNE PNLEPALDLL SKHGSRLPAT STLGLIPDDL PVRSLESYFR1920
 1921 GRIRSANSLV NESRIVAGLR QAEGVSIAAR LHLGDDVQGR QGGRNRHVAI TDERHCVWCT1980
 1981 MAV

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