YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42548800, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVASIQDRT SEFKSVLAQA QRKQTSSKVS SQRRSLLTDA QKDAANGHPT GPPRRSDFAR  60
   61 KAAEIGRGIS ATMGKLEKLA QLAKRRTLFD DRPVEINELT FVIKQDLSSL NQQIGALQTI 120
  121 TKQQHPKADQ EGEHNKNVVY LLQGKLTDVS VNFKDVLEAR TKNIQASRSR TENFISSVSQ 180
  181 HAQPSIQQSA SPLYGTPARN SPAPGQDTLS LNPVGDQQLL MMEEAQPSNT YIQQRGEAIE 240
  241 AIEKTIGELG SIFGQLATMV SEQSEMIQRI DANTEDVVDN VEGAQRELLK YWNRVSSNRW 300
  301 LIAKMFGVLM IFFLLWVLVS G

Type	Start	End	Confidence
Cytoplasmic	1	299	0.84
Transmembrane Helix	300	319	0.96
Non-Cytoplasmic	320	321	0.70