YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42550008, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.98
Transmembrane Helix	19	42	0.93
Cytoplasmic	43	61	0.93
Transmembrane Helix	62	82	0.91
Non-Cytoplasmic	83	97	0.84
Transmembrane Helix	98	118	0.92
Cytoplasmic	119	138	0.95
Transmembrane Helix	139	161	0.91
Non-Cytoplasmic	162	171	0.75
Transmembrane Helix	172	193	0.92
Cytoplasmic	194	202	0.82
Transmembrane Helix	203	223	0.94
Non-Cytoplasmic	224	261	0.97
Transmembrane Helix	262	284	0.86
Cytoplasmic	285	294	0.79
Transmembrane Helix	295	323	0.74
Non-Cytoplasmic	324	353	0.82
Transmembrane Helix	354	376	0.76
Cytoplasmic	377	407	0.83
Transmembrane Helix	408	430	0.87
Non-Cytoplasmic	431	436	0.75
Transmembrane Helix	437	458	0.92
Cytoplasmic	459	462	0.92
Transmembrane Helix	463	484	0.92
Non-Cytoplasmic	485	504	0.93
Transmembrane Helix	505	527	0.92
Cytoplasmic	528	576	0.98
Transmembrane Helix	577	597	0.89
Non-Cytoplasmic	598	609	0.79
Transmembrane Helix	610	633	0.89
Cytoplasmic	634	674	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGPSSG TVEPPLSQAY GYGIVLGIGF LFALGMIFTT YVLKKYNHEK QTSEMFNTAG  60
   61 RTVKSGLVAS AVVSSWTWAA TLLQSSGVAY RYGVSGPFWY ASGATVQIIL FATIAIELKR 120
  121 RAPNAHTFLE VIRARYGRIT HCVYICFCLF TNILVTAMLL TGGSAVVTSL TGMHTAAACF 180
  181 LLPLGVVIYT MFGGIKATFL TDYVHTVIIL VIILIFALTA YATGTELGSP SAVYDALSKA 240
  241 AKNHPVEGNA EGSYLTMRSR EGIIFFVINI VGNFGTVFCD NGYYNKAIAA HPVAALPGYI 300
  301 IGGLSWFAIP WLCATTMGLS ALALETSPSF PSYPNRMDPA DVSAGLVLPY AAVALLGKSG 360
  361 AIITLIMIFM AVTSAASAQL ISVSSIFTYD IYQTYVNPQA SGKRLIAISH TTVVMYGLIM 420
  421 ASFSVGLHYI GISMGWLYVW MGVMISAAVI PATLTLLWSR QNWIAAAVSP ILGLVCALIA 480
  481 WTVTCSREFD GVLSVDNLGS NNPMLAGNVV ALLSPVIFVP VLTFGFGADK YDWASMASIK 540
  541 QADDATDSNG DSETAVATSF AVAPEEDMAK LNKASKIAKT MTVCMTVALL ILWPMPMYGS 600
  601 GYVFSKPFFT GWVTVGIIWL FGSSIAVGLF PLWEGRQSIV RVTKGMFGMG GKHDTEEIQG 660
  661 QSVKEEKIEE FDKQ