YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42544330, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	118	0.97
Transmembrane Helix	119	138	0.92
Non-Cytoplasmic	139	159	0.87
Transmembrane Helix	160	180	0.93
Cytoplasmic	181	198	0.85
Transmembrane Helix	199	221	0.84
Non-Cytoplasmic	222	229	0.66
Transmembrane Helix	230	248	0.88
Cytoplasmic	249	397	0.98
Transmembrane Helix	398	417	0.89
Non-Cytoplasmic	418	454	0.90
Transmembrane Helix	455	477	0.85
Cytoplasmic	478	525	0.91
Transmembrane Helix	526	547	0.79
Non-Cytoplasmic	548	553	0.71
Transmembrane Helix	554	574	0.71
Cytoplasmic	575	584	0.78
Transmembrane Helix	585	605	0.95
Non-Cytoplasmic	606	606	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSIETLAN GNGHAGEHDH VLRPRPRKPK HSQVSDVVRM TSTSDGEHLM PDNASTGSAS  60
   61 GLTSGRSTPV PENAPPSVKS LSTARKQVRA EQRRRIFPTI EFASRVSHFD PESDYRDFHG 120
  121 FFNLFWIGLA IMGITSMLRN LKDTGFPLRV QIWSLFTVKL WHLAIADFLM VATTAVSLPL 180
  181 NRAARNAKPG SFLDWNKGGI AIQSIYQVVW LTLWIIVPFY FEWTWTSQVF FLLHTMVLLM 240
  241 KMHSYAFYNG HLSQTEKRLH ALDNPFSPHD RRPAYQYPST DLPASVTKGE SNSTNAKKRR 300
  301 RQRQKKQEAK QSANGHKSND EEPINHDLLA PSPVASPSNS ADEVDEIRED LARELTSPIG 360
  361 NVTYPNNLTW SNYTDYIFCP TLCYEIEYPR TTHINWINLI SKIIATFGCI FLLTIISEDF 420
  421 ILPVLLDASK RLDAVPTESS VSEKLLILAE TISWLLFPFM LTFLLVFLVI FEYVLGAFAE 480
  481 ITFFADRHFY SDWWNSTDWM EFSREWNIPV YSFLRRHVYS ASRPRIGRGA ATALTFLISA 540
  541 FGHEIVMACI TKKFRGYGFV CQMLQLPIVM LQRTRWVRGK ETLNNVCFWA SMVLGLSMIC 600
  601 ALYVLV