YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46111431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSTGFAPP QAVALLVVYC LIYVIPLYFS AATRPSPTRS RDAPEAIRAR IFAVSLSTAL  60
   61 CSLITLYLLS SHGAVAVREP LHFMGYWPPG LIDAARVLWL TALLFAGPLY ESLVIDGTAH 120
  121 QWLRLEPLRD LWTDWPTWRN MVAGPITEEC LFRSAGVPLL LRSGASLTGT IFMSPLIFGL 180
  181 AHLHHFYEFR ITHPRTPLPV AIARSLLQLS YTSLFGAYAT FLFLRTGSLL AVVLVHTFCN 240
  241 CMGLPRLWGQ LDPYWLPEGD PAAASSRKIW TGVYYVLLVG GLIAWWQNLY SLTETPMALA 300
  301 EF

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.82
Transmembrane Helix	12	31	0.95
Cytoplasmic	32	50	0.90
Transmembrane Helix	51	71	0.93
Non-Cytoplasmic	72	93	0.82
Transmembrane Helix	94	114	0.86
Cytoplasmic	115	162	0.87
Transmembrane Helix	163	184	0.88
Non-Cytoplasmic	185	214	0.74
Transmembrane Helix	215	240	0.76
Cytoplasmic	241	269	0.67
Transmembrane Helix	270	289	0.91
Non-Cytoplasmic	290	302	0.70