YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46115602, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.99
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	117	0.79
Transmembrane Helix	118	141	0.88
Cytoplasmic	142	156	0.90
Transmembrane Helix	157	179	0.86
Non-Cytoplasmic	180	192	0.86
Transmembrane Helix	193	213	0.91
Cytoplasmic	214	225	0.77
Transmembrane Helix	226	245	0.95
Non-Cytoplasmic	246	252	0.88
Transmembrane Helix	253	276	0.91
Cytoplasmic	277	294	0.90
Transmembrane Helix	295	316	0.92
Non-Cytoplasmic	317	332	0.91
Transmembrane Helix	333	356	0.86
Cytoplasmic	357	369	0.76
Transmembrane Helix	370	390	0.94
Non-Cytoplasmic	391	398	0.79
Transmembrane Helix	399	422	0.89
Cytoplasmic	423	442	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHPSCRGAT AADPSMDRDS YHLNNLISNR TSFLDPNDQD PTTDVESGTS TPSPSIRKQQ  60
   61 QPSNTMCDIY DPNRPKLKLR QRLKHFTWAW YTLPMSTGGL SLLLYAQPHQ FNGLRTIGLV 120
  121 IYIINLIIFT SVSVAMASRF LLHQGTFVKS LTHPREGFFV PTCLLSMATL ITSTDRYAIA 180
  181 KDNANLVWAV QASFWGYLIV ALILAIGQYS YVFAAHSFSL STMMPTWLLP VFPIMLSGTI 240
  241 ASVIAETQPN FDALTIIGAG LTCQGLGLSV AVMMYAHMVG RLMQAGLPNR EHRPGLFMCV 300
  301 GPPAFTALAV IGMANGMPDS WDIVNGDGAA TVAVVKLIAI MSAIFLWALS LWWFGIAAVA 360
  361 VIQSPPKYFH LGFYAMVFPN TGFTLATISI GKALESPVIG WVATGMTILI LCVFVFVFTC 420
  421 HIRAIIAQDI MYPGRDEDVE DH