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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42550966, gi|...
Protein type: Transmembrane
Type Confidence: 0.79
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTPRLRS GFPATPAANR RHNNQQTPSS AGSPSYGKGS TTRSPSLPLA PESTRPQTTV  60
   61 SQPVIPLTVL DAPQQRLYTF GFYVLLWAWK LYDWLQVVED GDSSWFLFLK WIFIDFAFLF 120
  121 GVPELRIPWL ELSQPVVTTI FSLHLVLNYM LMFNIPVLID IKIPWQSWIL GFAKVLYDRE 180
  181 ISISEHNVKV STILNNHSLI MGKQIINILP EGSAILNPKG TPFCLTAKPK HAIDLPIYFN 240
  241 ATIPAEIELI RLDFETNKEE TIKISNREVN RVAKQIREHN TDQTTFGFQW DYPVKKPGVY 300
  301 RLGKVLDEYK LEVQRATTDT YVVPCPQARI RASSDSQRCI QELSNLSLDV YGTPPLKIQY 360
  361 SRTINGKDHS FHFQSLQPDG FSSPLLGASS SLVSDDQDDI SWARARKVTV GLNESMTSAG 420
  421 EWEYSIDEVY DAFGNVVKYA ELEEDPSQAR VKGLKYGFKV KERPKASMNG CDMRNPFKVA 480
  481 KGRSVRLPVD FSLIGSKDDT SHEVTWEFSP INSLTNSGEH GDEVSIGGYN AKNAMDKPFV 540
  541 SEPGLYTLKT ISSGSCKGEV KEPSSCLLLN PLEPSLSVRS EEIPDKCAGN SIGLRVDLDL 600
  601 VGTPPFVVRY DIVTSDGHVE KQSHRVPGLR SQLELVPKMA GRHKYIFKSV DDAVYENQPL 660
  661 TGDDKVLEQV VKPAASAKIS SSSGVVNACL DSEVELDVIL YGEAPFNLEW EIVHDGKRKS 720
  721 ERVTGVQESS FRIKTNTLRK GGEYILALSS VQDKRGCKTF LQDQVKIAVR RQQPRAAFGF 780
  781 VEHKQKIMAV EDTHLRLPLR LEGEPPFEIT YRNLAGNGEV LTKRANNAND NLLVKSQGTY 840
  841 ELVEVRDVQC PGSVVPAAAR FEVGWFPRPE ISVVESPSIK SDGNTFVKQD ICEGDIDGFE 900
  901 VNLKGSPPYH VQYDVTHKPV KGSKAFTRKD FDAPLAKAAI SMDTTKAGDY TYKFSALADN 960
  961 LYNSDKNFHP LTLTQRVNAK PSAGFTKPGQ SLKYCMEEQE HEDRIPIKLT GEAPFYVEVE1020
 1021 IKHQAGSPAE TYRIPSIDSN SYGIRIPRQH LRLGAQQVRI RTVRDARGCQ RKYEHGGPSV1080
 1081 QIHLYEAPSI YPLESRRDYC VGERIAYTLS GTPPFDISYD FNGRWNAKSQ TTSFRRIAEK1140
 1141 PGDFTITSIS DKASECRAAV NIPKTIHPLP SVQISRGKQS RVDIHEGNEV DIFFEFWGTP1200
 1201 PFEFTYTRSS NAKKGQRSVV LETRHDVSYE HSKVVKASQE GTYEVVAIKD KFCSFSTQQV1260
 1261 EKKQRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle