YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46122053, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	183	0.99
Transmembrane Helix	184	204	0.93
Cytoplasmic	205	211	0.85
Transmembrane Helix	212	229	0.96
Non-Cytoplasmic	230	252	0.87
Transmembrane Helix	253	273	0.86
Cytoplasmic	274	283	0.78
Transmembrane Helix	284	305	0.90
Non-Cytoplasmic	306	312	0.79
Transmembrane Helix	313	337	0.88
Cytoplasmic	338	357	0.91
Transmembrane Helix	358	378	0.94
Non-Cytoplasmic	379	398	0.87
Transmembrane Helix	399	419	0.93
Cytoplasmic	420	530	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLTGLLVL GMSLWTTQAY EIGLSNKEGY QEYCTGMYSK SSWGGPVDPF ILVKFLNSSD  60
   61 SGVKDPTASL VIFEWKDRNL VGIPDPDVPG NRLGVCGDDF VKQGYCNKTD IGKFILNPDV 120
  121 DKKSSSVVLT KAVHLNTAAP INYAIKKTGY YCVLTDVVNT KKYDLVVEYR NAYGELEATQ 180
  181 IPKLPFYGGM SILYALLAAY WGFLYYQHRH DISILIFLVV EMLITWGFYE YQNRHGSNIG 240
  241 SKVFLTIVGI LNAGRNSFSF FLLLIVCMGY GVVKHTLGKS MIRVRWLAAA HFLFGLVYSL 300
  301 TFLSITPETA GPFVLLIVLP LAGTLTAFYV WTLNSLNWTL KDLRERKQHA KEAMYRKLWW 360
  361 AILISVMVIF GFFFFNSFTF ASASDPDFVP FHWKTRWFIL DGWLNVVYFA DVAWIAYLWR 420
  421 PTSNNRRFAM SDEIAQDDDG NFDLGDIGVP GEDSDDEEAE VAKPQNNSQN ANGLSFSSAS 480
  481 RSAPQQPRNT RTGPRESLEN ETIFAVGEDG DKFSDDDDSD EEDAKLVKAK