YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46121261, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDVDSIVK GASTPTQGAK DVAGSSPILS TTVKQGDPLH HTPSSPSMIY LNLLILEASL  60
   61 RAQFLELRAR KRHHTFFLTL LSLWITGFGW ALFLAPREDG RGVGGSIYWA VEGAEKVCFM 120
  121 GGIITAILVW VTGIWERGIR WPRRWFVISN RGLRGFNCKL IIIRRTWWAE ALSTIGFFLT 180
  181 YGLFSHTASS SYRYVEPTLL REVEKELQIT SDTHPTLVLP HEDEEKGGHE EDLAPGGDYV 240
  241 KLLLLAKPFS ATFRENWELY RTEYWEKENE RRALLRQKVK ERDHQLVRAQ YPWTWWFPGR 300
  301 QPRRHEPEKT APHPARHITV ERERRRRGSS VRRASTSSTR SPTPAFEEEQ GAHRRSSSGS 360
  361 ASKGRKRLST SSKPKRPSND SRSVTPDFSS PLARESSAND TPESGPEGGK VLRSSSSRST 420
  421 VGSKERE

Type	Start	End	Confidence
Cytoplasmic	1	74	0.82
Transmembrane Helix	75	95	0.94
Non-Cytoplasmic	96	116	0.88
Transmembrane Helix	117	135	0.96
Cytoplasmic	136	165	0.92
Transmembrane Helix	166	184	0.90
Non-Cytoplasmic	185	427	0.97