YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46123599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPPQPGP QPGPGQIPMP QPGQRPTPEQ IQAMQRQLAI DAEKNGMTVP EFIEHIKRQA  60
   61 QEQMRMRAQQ QQGGDHGHGH DHDHDHDHSH PHPHQQQQQG RSQPITPGPP NPKALALAAF 120
  121 LRGQDLKPRT VIMNGERKDM FRVKRALRAL QSPAYEKARK KNPLLPEITD RASLENTFKL 180
  181 LPLSMLALRV SKIEPQAGPN GKKPKRVKGQ WTVKVEPQQE AQDDMYYAWL WEGSQLKRKI 240
  241 YAGLALLAIF AVVLYPLWPL VLRQGVYYLS WGLLGLLGLF FLMAIFRVIL FCITYFTNSP 300
  301 GLWLFPNLWE DVSFMDSFRP VWAWHETEKK KKKKKSTVAV PGTSVNPALA GATGLAPTSA 360
  361 TTTGTDTQVK TGDVQQRHYE APRVEELEDD A

Type	Start	End	Confidence
Cytoplasmic	1	239	0.93
Transmembrane Helix	240	260	0.94
Non-Cytoplasmic	261	268	0.75
Transmembrane Helix	269	291	0.86
Cytoplasmic	292	391	0.81