YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46135993, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRPMLARSA LRSARLSSFR PLCQAQRFSI KAEAASSAQH MGLDASKLTI QKTGNHKTLS  60
   61 KPETLVFGKE FTDHMLAIEW NQDKGWLEPK ITPYQNLSLD PATCVFHYAF ECFEGMKAYK 120
  121 DKNGKVRLFR PDMNMARLNK SAARIALPTF EPAEFAQLIS KLVNLDSRFI PDQRGYSLYL 180
  181 RPTMIGTQKT LGVGPPGSAL LYCIASPVGP YYPTGFKAVS LEATDYAVRA WPGGVGDKKL 240
  241 GANYAPCILP QLQAASRGFQ QNLWLFGEEE FVTEVGTMNM FVALKNKETG QKELITAPLD 300
  301 GTILEGVTRD SVLALARERL IPQGWKITER KYTMKELAEA ADEGRLLEAF GTGTAAIVSP 360
  361 VRSISWKGKL VDCGLSEVEE SGEIALQMKN WIEAIQYGDE EHEWSYTI

Type	Start	End	Confidence
Signal Peptide	1	25	0.81
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	408	0.99