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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46124731, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRPPGGGF NTGHSNNRDD LLLDLDNDQP VYGGGQRSNL NDDDLMRFHE QNQDPPPGRT  60
   61 SVSYDDFVGA RDANHPPASH PPGALGVPGS GPGSNPYLNR QYSQTSELGN YQRYADDFDD 120
  121 YPAEGDSYYH NDGGARVDER TPGLGMNSAR NRNSVLTMGG GFIGKVKNRL GMGQGYSEMD 180
  181 LPLTQPGHDR GDSVGGQSQM PPQQGQKGRF DMGNFKFGFG GSKPDPSTLG PRVIYLNNPP 240
  241 ANAANKYVDN HISTAKYNVA SFLPKFLYEQ FSKFANIFFL FTAALQQIPN LSPTNPYTTI 300
  301 APLTVVLIIS AGKELVEDYR RKQADNALNT SKARVLRGSN FEETKWINVA IGDIIRVESE 360
  361 EPFPADLVLL ASSEPEGLCY IETANLDGET NLKIKQAIPE TSAMVSPNEL SRLGGRIKSE 420
  421 QPNSSLYTYE ATLTMQMGGG EKEYALNPEQ LLLRGATLRN TPWVHGVVVF TGHETKLMRN 480
  481 ATAAPIKRTK VERKLNWLVL LLVGILLILS IVCTVGDLIQ RKVEGNALSY LYLDPTNTAG 540
  541 QITQTFLKDM VTYWVLFSAL VPISLFVTVE MVKYWHAILI NDDLDMYYDK NDTPATCRTS 600
  601 SLVEELGMVE YVFSDKTGTL TCNQMEFKQC SIAGIQYSED VPEDRRPTMI DGVEVGLFDY 660
  661 KALKSNLANG HETAPAIDHF LSLLSTCHTV IPEMDEKGGI KYQAASPDEG ALVAGALDLG 720
  721 YKFTARKPKS VIIDANGREL EYELLAVCEF NSTRKRMSTI YRCPDGKIRC YCKGADTVIL 780
  781 ERLNEHNPHV EITLRHLEEY ASEGLRTLCL AMREIPENEF QEWYKIYDTA QMTVGGNRAD 840
  841 EVDKASEIIE KDFFLLGATA IEDRLQDGVP ETIHTLQQAN IKVWVLTGDR QETAINIGMS 900
  901 CKLLSEDMML LIINEETAAA TRDNIQKKTD AIRTQGDGTI ETETLALIID GKSLTYALEK 960
  961 DLEKMFLDLA IMCKAVICCR VSPLQKALVV KLVKKYQKES ILLAIGDGAN DVSMIQAAHI1020
 1021 GIGISGEEGL QAARSADVAI AQFRFLRKLL LVHGAWSYQR VTKTILFSFY KNIALYMTQF1080
 1081 WYTFQNVFSG QVIYESWTLS FYNVFYTVLP PLALGILDQF ISARLLDRYP QLYMMGQQNY1140
 1141 FFRLKVFLEW IANAIYHSIV LYIWGELIWH GDLIQGDGKI AGHWVWGTAL YGATLLTVLG1200
 1201 KAALVTNNWT KYHVIAIPGS MAIWYVMTAV YGIVAPMAGV SMEYHGTIPR IYESPIFWLQ1260
 1261 TVCLAIMCLL RDFVWKYVKR MYRPQTYHHI QEIQKYNIQD YRPRMEQFQK AIRKVRQVQR1320
 1321 MRKQRGYAFS QADESQTRVL QAYDTTKHRG RYGEMASSRP AGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle