YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46125277, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLLQTTTA VLGWTAVAAN AYELTITDTK SVESAAAKAA KGLTSWYTGM NPGDTPGNLP  60
   61 DPYYWWEAGA MFGTLVDYWW ITGDDTYNAI TKQAMIHQAG SDGDYMPDNQ TMTEGNDDQG 120
  121 FWAMAAMSAA EHQFPNPPED SPGWLAQAQA VFNEYVSRWD DEYCGGGMRW QIFKWNTGYD 180
  181 YKNAISNGCF FNVASRLARY TGNDTYADWA GKVFDWHIKA GIITDKFEIY DGVHIGKEKS 240
  241 SVCDDIDKTQ WSYNSGVFLH GAANMYNITS SDKWKKRADG LLDDVFNKFV KNEIIYEQFC 300
  301 EPHKQCSQDQ QSFKGYLARW LAATTQLYPE TSARIIPLLK TSAQAAAKVC TGSGDGYKGP 360
  361 AGTACGFSWT TNTFDGSLGV GPQMNALDIF MYTLVGNAKA PYTSKTGGTS KGDPGGGNTD 420
  421 ANDNDGTPKR KAITGADKAG AGILTFLFVA GIIGGVSFLV LDL

Type	Start	End	Confidence
Signal Peptide	1	21	0.92
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	438	0.94
Transmembrane Helix	439	461	0.81
Cytoplasmic	462	463	0.63