YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI18_GIBZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	34	0.84
Non-Cytoplasmic	35	108	0.51
Transmembrane Helix	109	131	0.88
Cytoplasmic	132	138	0.77
Transmembrane Helix	139	161	0.80
Non-Cytoplasmic	162	204	0.64
Transmembrane Helix	205	227	0.63
Cytoplasmic	228	236	0.85
Transmembrane Helix	237	260	0.86
Non-Cytoplasmic	261	303	0.91
Transmembrane Helix	304	323	0.88
Cytoplasmic	324	345	0.95
Transmembrane Helix	346	364	0.71
Non-Cytoplasmic	365	369	0.40
Transmembrane Helix	370	386	0.47
Cytoplasmic	387	396	0.54
Transmembrane Helix	397	420	0.88
Non-Cytoplasmic	421	423	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLDYKSRP ILSLTSIFAA WKSFLLAIAL GASIGPDYDT STSLFFAIVH GASSPRSLAT  60
   61 RLTRWDALYF MHDAVKGKVY EQEWAFGIGM PAAVRSICGL LNLQRWEALV AIAISHVSHL 120
  121 VAVLALYQLT IVLCNDRKLA YLASVVHVLS PAGLFISAPY AESPFACMSF VGNLLYAISL 180
  181 KSSPDSLKRN LAVVGAGLSY GISCTLRSNG LFGGVLFAVE TVKCLLALRN GFSISKILRL 240
  241 VAPLIGGILV AVGFVAPQVL AWMRYCNGNE EQRAWCGHRI PSIYTFVQAE YWDVGFLKYW 300
  301 TPNQIPLFLL AAPMLTILLK SGTETMREPS RGLGAVAMGT NEESRLLVRT LAAIQTLLAV 360
  361 LAITNYHVQI ISRLSSGYPV WYWWVASCLM DKQRQSLGYG VIVFITMYAA IQGGLFASFL 420
  421 PPA