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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42554130, gi|...
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPESQPDSPP AVANQAGRAI PVGLNEAALD SPTFRVTAAN FSDQVDAIEK WLNGYAQSTS  60
   61 KLLHDILALE ETINTFLVKT MPSVSDGVVD NDYTFLALKR VGDGWREYWI QMISTMKKID 120
  121 GTVVDPIRQF IVGDLRNFKE CRRAMDQAQR TFDSTLARYV SQSKTKEPSA LREDAFAVFE 180
  181 TRKAYIKASM DYCQLAPQLR FSMDKLLVKI CSERWAQLRR TREAAGDTSR WNQEMERIQG 240
  241 WSNEMGASEM VFRRELQSAR REIGENALAG FKPSRELEDY STSTVPFLGS RGPITVRLEE 300
  301 GATVVSEKQG WLFLRVLQGK PARHTWIRRW YYCRDGIFGW LIPGPLGVLQ GDEIGVLLCN 360
  361 AKPAVAEDRR FCFEVKTKSQ TILLQAETQG ELTEWLEVFE VTKKRAFETT MNRNNASLPG 420
  421 SIDPAFSISP PSIPEFSAKS LDAQIGIYDE STPNIDRTNT LPVPGPEGNL STRQSFDVNG 480
  481 SLSRRTITSL SRDLAREEGE SGREHAARII QKLDLHRKAT FGNQGPDGVQ GGSASTTGLA 540
  541 SMMATSHTLP PGFPGPIAST SNFRQTPSML PSVDTQAGNL APATLAKPPS MTGLSRIAVL 600
  601 TAGDRQPVGN NRKLPASVVA NYWGSSLWGA MNAPAQPVLP RLDEDDPIGV VVPGSTVGQS 660
  661 LQRKDTGEYF PRNYPSELRA QHAQFRLLFP DAPLEEKLVL VFRAAWTGSP ERGPGKPDMA 720
  721 GDGRIYVTPD NMYFYGQQIG LVTAYSISLD IISEVTAAPG RDCDFIFLHL NENANETGYT 780
  781 RITIKVFLDD LGLLHTRLNL LIDDIQAEEP MDVEAIITTL INLEKEEYDR PSPSVESWEE 840
  841 VSANTPMDDG TSTGRPVARR MEFSPPSRPS RSHPRHNHKL HLPVRPVIYE PEGMKEMAAE 900
  901 RHFEISAKSC FHVLFGDKSF VFPKLYFERR AQQIAQGPWV LVDQGRMRRD FQFKVDYKDV 960
  961 LGRSKTADVN DYQIIDVFSD HVTYVVTHVK TAWHLPHSSW FKVVTKVVIT HVAKSKSLSK1020
 1021 NLIDRQAIHD AASDAEELAE VATDQVRKLG TRSRTNRAIQ VYGQIGQQTE VVVFSPAATD1080
 1081 SAKKQAIKPR TLTTMVFETI RSFGESAVSS VIMWAIAVLR NVFNLITAQW IILALLGFST1140
 1141 LTNLLLTSSE TSVWWKERRA VGFMRDVGIR PNTMMSKAIY FADLHEASGN NQALSFPDNS1200
 1201 TCFSTFKDLL DTTDMDTPWE DAGASLASPT SRATARRLRR TRQRLGTYRH DLLVAMRVVN1260
 1261 SIEREMLQSE WENWLFDEKL LCEDLDAMLD QQDGTKGRKK GSENGKGFKG SQKVTEPIPV1320
 1321 QRRQVLEEWR DSYCGSCKQD YQVVMKGRKL MGSKYAATLN SNTVHNPHQQ LHPHRISPSM1380
 1381 GGTHHEPLGS MGPVEWEQVP QDDLNEFIAD IFSETQTVVE SIPGPAPKES STTGGRARSK1440
 1441 TESAASAPEA KRALTLRQTA EAISHSQDLQ KEWKEIKVNA KDNPLGINVY KLGAKDGRGA1500
 1501 WFARRSVHEG LSFDDWKKGL SVEFSETMKV QGAPGSGNIR GIGADKRVEE KTIGDHGHLQ1560
 1561 GPTAPRDFVT LLLTSETSVS PGQGSRPLRQ YMIVSKPCEH PECPPRQGII RGYYESVEVI1620
 1621 REVPIDNFAS RRSLSSADLL ERDENKSSSQ NPGTEPKPLN KPSTAVEWLM VTRSDPGGSV1680
 1681 PRFLIEKGTP PGIVGDAGKF FKWVTSKAAH GFAEPEEPVA VPKTAGGTEA PVSEKRQPST1740
 1741 TPAPTTNIEA NKVETVNLQN QDDPFPGSNG LYGVIAGAIG AASSYIPTSL LKTWGTGSDM1800
 1801 ASSDTNGSDI HAIAEEHHEV DSDTSSIRSF ASALEKSVTA EGKANGSAVE SHSETSHSNP1860
 1861 QQSLADKELK KLEHKKKKLD EKLARIEERR QSKLVGDKEK DATMLAKLRE KHEKEVAKQE1920
 1921 EKYRREMRKL EEKRERDQRK AEERRRKAAE QEEKNKLSLE LERVRAERDV AQRQIELLEG1980
 1981 QVGELQAQNT MLVRKLGKNG LLDGIGSPAS SVKSLQRANT EI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle