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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46126177, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDGRRSPD TGQDHGHHDR RGHRGSNSNP NGNGNARRSL YRMSSNQSRS SIFEDVEMAH  60
   61 EELFSGPVAE SLPTSVSAFS HRRPRADSTA SFTYFDDENQ GFPDDDDDDA ESVAVQSIAG 120
  121 DYIRRSVSDI GDLEFGVDDT EEFDESPERD YRISEDDYVL RRHSSVYSRH SVNAHLLRRD 180
  181 STATHGSFRR HGRTSQKVYL ANEDLTIVIA GFKTSKIGSA IYTSLCILTC GLAYLLFRWL 240
  241 PRWYVGLLGQ ATPLRECEWV VIENQWGELI TMSVRSELYG RPLSSIFGLP EKLYSDALDE 300
  301 DVDPIVDDLR TLDYRYIRLC FHPLKDKFML FSGWKDPNWT DVGLTRVGLD TDEKGVREVV 360
  361 FGSNLIDIEQ KSTGQLLVDE VLHPFYVFQI ASLFLWSMDS YYYYAVAIFL MSVGSIAATL 420
  421 IETRSTMKRL REISRFECDV RVLRNGFWRF ISSSDLVPGD VYELSDPSLT QLPSDSLLLT 480
  481 GDCIVNESML TGESVPVSKL PATDETLRTM DLAASSVTPE TARHFLFCGT KIIRARRPQE 540
  541 DQGDDAVALA LVVRTGFNTT KGSLVRSMLF PKPSGFKFYR DSFRYISVMA IVAAIGFLAS 600
  601 LVNFVRLGLA WHLIIVRALD LITIVVPPAL PATLTIGTNF ALNRLKKKQI FCISPQRVNV 660
  661 GGKIDIMCFD KTGTLTEEGL DVLGVRVVDR DSNKFGEIVT EPQMLLAEAT RQNAQDTYRA 720
  721 ALHTMATCHS LRSVDDELVG DPLDLKMFEF TRWTYEEGKQ NTSEEDEEQG GLAPSIARPP 780
  781 TGTIELGVQK TFEFVSNLRR ASVIVRPFNQ KSGDIFVKGA PEAMKEICRP ESFPEDYDEL 840
  841 LSWYTHKGYR VIGVASRHLK KLSWVKAQKM TRAEVESDLD FVGFIVFENK LKPTTAAVLE 900
  901 ELLASNIGAV MVTGDNILTA ISVARECGLM DRKAHCFVPR FIEGDFRDAE ARIEWESIDN 960
  961 SLYHLNERTL LPLPPPPEAD ASLPFDIANL RNYTLAVSGD VFRWMVDYGS PQALQRMLIN1020
 1021 GKVFARMSPD EKHELVEKLQ SIDYTCGFCG DGANDCGALK AADVGISLSE AEASVAAPFT1080
 1081 SRVFDIRCVL EVIKEGRAAL TTSFSCFKYM SLYSAIQFTS VTFLYARASN LGDFQFLFID1140
 1141 LALILPIAIF MGWAGPAPRL CRKRPTADLV SRKVLTPLLG FMLICIGFQA VTYITVKEQS1200
 1201 WYIPPVVHKD EPSIENSQNT ALFLFSCFEY ILSGIILNAG RPFRQKTTQN WPFAATIFIA1260
 1261 LLITVYMILT PAKWVTDLMQ LTEMSWDYEV FLVALGAAYF IVAWAFEHFL ALKLARLIGS1320
 1321 IQQSVTGKGK KRKEYKVIAE ASRI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle