YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2134137, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIAGENMD ETSVLPGHPQ DSYHPDQDDH ECCERVVINV SGLRFETQLK TLAQFPSTLL  60
   61 GNPKKRMRYF DPLRNEYFFD RNRPSFDAIL YYYQSGGRLR RPVNVPLDMF SEEIKFYELG 120
  121 EEAMEKFRED EGFVKEEERP LPDKEFQRQV WLLFEFPESS GPARIIAIIS VMVILISIVI 180
  181 FCLETLPELK DERIFSRRVN NSTVFYKSNI FTDPFFVVET LCIIWFSFEL VVRFFACPSK 240
  241 PEFFKNIMNF IDIVAIIPYF ITLGTEMAEQ EGPQKGEQAT SLAILRVIRL VRVFRIFKLS 300
  301 RHSKGLQILG QTLKASMREL GLLIFFLFIG VILFSSAVYF AEAEEDESHF TSIPDAFWWA 360
  361 VVSMTTVGYG DMYPVTIGGK IVGSLCAIAG VLTIALPVPV IVSNFNYFYH RETEGEEQAQ 420
  421 LLHVSSPNLA SNSDLSRRSS SAMSKSEYME IEEDLNNSID NFREANIRTG NCTIANQNCV 480
  481 NKSKLLTDV

Type	Start	End	Confidence
Cytoplasmic	1	162	0.67
Transmembrane Helix	163	186	0.86
Non-Cytoplasmic	187	214	0.64
Transmembrane Helix	215	236	0.73
Cytoplasmic	237	246	0.71
Transmembrane Helix	247	265	0.61
Non-Cytoplasmic	266	278	0.47
Transmembrane Helix	279	293	0.43
Cytoplasmic	294	319	0.82
Transmembrane Helix	320	341	0.93
Non-Cytoplasmic	342	355	0.77
Transmembrane Helix	356	373	0.77
Cytoplasmic	374	380	0.55
Transmembrane Helix	381	402	0.88
Non-Cytoplasmic	403	489	0.72