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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115440073, gi...
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQQESSDA GTLFSAPSRN LSSSSSAFVS ANQSPFFTPR CLSARVSDHA HPENNSSLSG  60
   61 TVLKISDILS SDTLLKREQL PSATVGLLPS DASPPPSICT SSNFDTPAIV YNNPSFISTF 120
  121 SDPCQGSSSA TSTGVRSTQK EKHKRQWGLY RKSSSSQPTT SATSVNRLRS FDVYIGFHGR 180
  181 KASLLRFTNW LRAELEIHGI SCFASDRSRC RSSHSHDTIE RIMNASTYGV VILTRKSFGN 240
  241 PYTIEELRNF FGKKNLIPIF FDLGAADCLA RDIIEKRGEL WERHGGELWM LYGGMEQEWR 300
  301 ESVDALSRVS DVQLEANDGN WRHCILQTII VLATKLGRRS VVDRVNRWRG RVEKEEFPFP 360
  361 RNADFVGRKK ELSELELILF GDVSGDGERE YFEIKTKQRR KGLVIGRSVN NYEQVNTDDG 420
  421 KGKEPVLWKE TKENIEMQRL GSPPRHGRPS RTKNDGRYGR KRRCRKILYG KGIACISGES 480
  481 GIGKTDLVLE YAYRFSQRYK MVLWVRGESR YIRQNYLALR TFLEVDLSVD SHLHEKGSDR 540
  541 CFEEQEEEAI AKIRQELMRD IPFLVIIDNL ESEKDWWDKR VITDLLPHFG GETHFIITTR 600
  601 LPRVMNLEPM KLSYLSGAEA MSLMKGGVKD YPLVEIDALK AIEEKLGRLT LGLGIVGSIL 660
  661 SELPITPSRL LDTLSRTLPI RDCSWNERDA ISLKNHEILV RLLDVCLSIF DHADGPRSLA 720
  721 TRMVQVCGWF APSAVPIHML ALAAHKVPKK HRRGPRWRKW WRTLTCGLAT SRMKRSEAEA 780
  781 AAMLMRFGIA RCSTKPEYVQ FHDLIRLYAR KRGGTRMAQA VVQSIYLRGS IKHSSEHLWA 840
  841 ACFMFFGFGS DPFLVEPRPS ELIFFVKQIV VPLAINTFIT YSRCNAALEL LRLCTEALER 900
  901 AADSMLSHAG KWRETPLSCF RPTQSEAQYT YLWQELALLK ASVLETRAKL MLRGGQYDTG 960
  961 DDLIRKAIFI LTSICGEHHP NTVSARETLS KLTRLLTNVQ LS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle