YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146600, gi\|987643
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANMFALILV IATLVTGILW CVDKFFFAPK RRERQAAAQA ARDSLDKATL KKVAPKPGWL  60
   61 ETGASVFPVL AIVLIVRSFI YEPFQIPSGS MMPTLLIGDF ILVEKFAYGI KDPIYQKTLI 120
  121 ENGHPKRGDI VVFKYPEDPK LDYIKRAVGL PGDKVTYDPV SKELTIQPGC SSGQACENAL 180
  181 PATYSNVEPS DFVQTFSRRN GGEATSGFFE VPKNETKENG IRLSERKETL GDVTHRILTV 240
  241 PIAQDQVGMY YQQPGQQLAT WIVPPGQYFM MGDNRDNSAD SRYWGFVPEA NLVGRATAIW 300
  301 MSFDKQEGEW PTGLRLSRIG GIH

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.77
Transmembrane Helix	6	27	0.83
Cytoplasmic	28	57	0.86
Transmembrane Helix	58	81	0.76
Non-Cytoplasmic	82	323	0.81