YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTM1_YEAST
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.91
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	196	0.99
Transmembrane Helix	197	218	0.93
Cytoplasmic	219	229	0.85
Transmembrane Helix	230	249	0.94
Non-Cytoplasmic	250	270	0.87
Transmembrane Helix	271	294	0.88
Cytoplasmic	295	304	0.92
Transmembrane Helix	305	326	0.90
Non-Cytoplasmic	327	333	0.84
Transmembrane Helix	334	354	0.95
Cytoplasmic	355	379	0.93
Transmembrane Helix	380	402	0.93
Non-Cytoplasmic	403	422	0.88
Transmembrane Helix	423	440	0.97
Cytoplasmic	441	523	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVYQFCRPF QLFTCFLCYL LVFVKANKEK ISQKNYQVCA GMYSKEDWKG KIDPFISFNL  60
   61 KKISGLSDES DPGLVVAIYD FQDFEHLGVQ LPDEEMYYIC DDYAIDIGIC EEENRDEFIV 120
  121 QDVVYDPYTS TNRSLANPIM TFSQNEVGLH DTRYPIKETG FYCVTAFRSS TSTKFNAVVN 180
  181 FRNAYGQLAG TEINKLPLYG LLAVAYVVAM ALYSFAFWKH KHELLPLQKY LLAFFVFLTA 240
  241 ETIFVWAYYD LKNEKGDTAG IKVYMVFLSI LTAGKVTFSF FLLLIIALGY GIVYPKLNKT 300
  301 LMRRCQMYGA LTYAICIGFL IQSYLTDMEA PSPLILITLI PMALALIIFY YMIIRSMTKT 360
  361 VIYLKEQRQI VKLNMYKKLL YIIYASFLSV LAGSIVSSFI YVGMNTIDMI EKNWRSRFFV 420
  421 TDFWPTLVYF IVFVTIAFLW RPTDTSYMLA ASQQLPTDPE NVADFDLGDL QSFDDQDDAS 480
  481 IITGERGIDE DDLNLNFTDD EEGHDNVNNH SQGHGPVSPS PTK