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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|191155
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFEEDFSGR KDKNFLKMGR KSKKEKKEKK PVVSVFTMFR YAGWLDRLYM LVGTLAAIIH  60
   61 GVALPLMMLV FGDMTDSFAS VGNIPTNATN NATQVNASDI FGKLEEEMTT YAYYYTGIGA 120
  121 GVLIVAYIQV SFWCLAAGRQ IHKIRQKFFH AIMNQEIGWF DVHDVGELNT RLTDDVSKIN 180
  181 EGIGDKIGMF FQAMATFFGG FIIGFTRGWK LTLVILAISP VLGLSAGIWA KILSSFTDKE 240
  241 LQAYAKAGAV AEEVLAAIRT VIAFGGQKKE LERYNNNLEE AKRLGIKKAI TANISMGAAF 300
  301 LLIYASYALA FWYGTSLVIS KEYSIGQVLT VFFAVLIAPF SIGQASPNIE AFANARGAAY 360
  361 EIFNIIDNKP SIDSFSKNGY KPDNIKGNLE FKNIHFSYPS RKDVQILKGL NLKVQSGQTV 420
  421 ALVGNSGCGK STTVQLLQRL YDPTEGVVSI DGQDIRTINV RYLREIIGVV SQEPVLFATT 480
  481 IAENIRYGRE NVTMDEIEKA VKEANAYDFI MKLPHKFDTL VGERGAQLSG GQKQRIAIAR 540
  541 ALVRNPKILL LDEATSALDT ESEAVVQAAL DKAREGRTTI VIAHRLSTVR NADIIAGFDG 600
  601 GVIVEQGNHE ELMREKGIYF KLVMTQTAGN EIELGNEVGE SKNEIDNLDM SSKDSASSLI 660
  661 RRRSTRRSIR GPHDQDRKLS TKEALDEDVP PISFWRILKL NSSEWPYFVV GIFCAIVNGA 720
  721 LQPAFSIIFS KVVGVFTRNT DDETKRHDSN LFSLLFLILG VISFITFFLQ GFTFGKAGEI 780
  781 LTKRLRYMVF KSMLRQDVSW FDNPKNTTGA LTTRLANDAG QVKGATGARL AVITQNIANL 840
  841 GTGIIISLIY GWQLTLLLLA IVPIIAIAGV VEMKMLSGQA LKDKKELEGS GKIATEAIEN 900
  901 FRTVVSLTRE QKFENMYAQS LQIPYRNALK KAHVFGITFS FTQAMMYFSY AACFRFGAYL 960
  961 VARELMTFEN VLLVFSAIVF GAMAVGQVSS FAPDYAKAKV SASHIIMIIE KVPSIDSYST1020
 1021 GGLKPNTLEG NVKFNEVVFN YPTRPDIPVL QGLNLEVKKG QTLALVGSSG CGKSTVVQLL1080
 1081 ERFYDPMAGT VFLDGKEVNQ LNVQWLRAHL GIVSQEPILF DCSIAENIAY GDNSRVVSQD1140
 1141 EIERAAKEAN IHQFIESLPD KYNTRVGDKG TQLSGGQKQR IAIARALVRQ PHILLLDEAT1200
 1201 SALDTESEKV VQEALDKARE GRTCIVIAHR LSTIQNADLI VVIQNGKVKE HGTHQQLLAQ1260
 1261 KGIYFSMVSV QAGAKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle