YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126195996, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLPLIWA VIIIFGIMMY VVMDGFDLGI GMLYPFFKDS GDRDVMMNTV APVWDGNETW  60
   61 LVLGGAALFG AFPLAYAVVL SALYLPLIFM LVGLIFRGVA FEFRFKAKPA KQHIWDKAFI 120
  121 GGSLVATFFQ GVALGAFIEG IPVENRSFAG GSLDWIAPFP LFCGLALIVA YTLLGCTWLI 180
  181 MKTEGRLQER MHDLARPLAL VLLAIIGVVS LWTPLAHAEI AARWFSLPNL FWFLPVPILV 240
  241 LVTFYALLRS VANNDHVKPF VLTLVLIFLG YSGLGISLWP NIIPPAVSIW EASAPPQSQG 300
  301 FMLVGALFII PFILGYTAWS YYVFRGKVKH GDGYH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.71
Transmembrane Helix	7	28	0.89
Non-Cytoplasmic	29	71	0.71
Transmembrane Helix	72	99	0.83
Cytoplasmic	100	117	0.87
Transmembrane Helix	118	138	0.93
Non-Cytoplasmic	139	155	0.92
Transmembrane Helix	156	180	0.90
Cytoplasmic	181	196	0.89
Transmembrane Helix	197	216	0.93
Non-Cytoplasmic	217	229	0.77
Transmembrane Helix	230	248	0.96
Cytoplasmic	249	259	0.81
Transmembrane Helix	260	280	0.95
Non-Cytoplasmic	281	299	0.89
Transmembrane Helix	300	323	0.89
Cytoplasmic	324	335	0.97