YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29389
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHTNLKKKF SCCVLVFLLF AVICVWLEKK KGSYYDSFKL QTKEFQVLKS LGKLAMGSDS  60
   61 QSVSSSSTQD PTGRQTLGSL RGLAKAKPEA SFQVWNKDSS SKNLIPRLQK IWKNYLSMNK 120
  121 YKVSYKGPGP GIKFSAEALR CHPRDHVNVS MVEVTDFPFN TSEWEGYLPK ESIRTKAGPW 180
  181 GRCAVVSSAG SLKSSQLGRE IDDHDAVLRF NGAPTANFQQ DVGTKTTIRL MNSQLVTTEK 240
  241 RFLKDSLYNE GILIVWDPSV YHSDIPKWYQ NPDYNFFNNY KTYRKLHPNQ PFYILKPQMP 300
  301 WELWDILQEI SPEEIQPNPP SSGMLGIIIM MTLCDQVDIY EFLPSKRKTD VCYYYQKFFD 360
  361 SACTMGAYHP LLYEKNLVKH LNQGTDEDIY LLGKATLPGF RTIHC

Type	Start	End	Confidence
Signal Peptide	1	27	0.97
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	405	0.99