YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25393377
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALITLEIML YELENVLYML EYGVFIYFPV NFAIFFLFRQ FLLRHFSKSY KPYISGLSRD  60
   61 KVKVSAIVPE YGENLEIFEK CLRSVAKNKP DEIIVVHDDK RKEVVDISKK YGAKVISLSR 120
  121 RVGKRGALII GWLNAIGDII VQLDSDTIME DNTINEIVKP FADPKVAGVQ GRPVLFRTDG 180
  181 RIPYLFGQII EYSRDIVVRA LNGTLNVIDG KIAAYRRSYL LETIRHFNHE TYGKRKLIAA 240
  241 DDKALTYYAN MNGYKTVYQA TAVAKSAAQP TFLKFLNQQL RWARSGYLYL IKEMRSGLFF 300
  301 KMPGKYRFHM LTYLLAPFSF ALALIDTLLV PGNPTALTWS YLAYYGFNIP IILYSLLIFI 360
  361 FGLYLSMKIS FGILNLKLPD KISFVDLITL GILGLFVIFP MFIYAAITHY GVSEWRGSSY 420
  421 LG

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.94
Transmembrane Helix	19	42	0.84
Cytoplasmic	43	308	0.99
Transmembrane Helix	309	330	0.91
Non-Cytoplasmic	331	345	0.83
Transmembrane Helix	346	367	0.88
Cytoplasmic	368	383	0.89
Transmembrane Helix	384	407	0.91
Non-Cytoplasmic	408	422	0.93