YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16197865
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.96
Transmembrane Helix	60	79	0.94
Non-Cytoplasmic	80	87	0.71
Transmembrane Helix	88	107	0.87
Cytoplasmic	108	169	0.80
Transmembrane Helix	170	192	0.86
Non-Cytoplasmic	193	197	0.83
Transmembrane Helix	198	220	0.93
Cytoplasmic	221	232	0.85
Transmembrane Helix	233	256	0.88
Non-Cytoplasmic	257	268	0.77
Transmembrane Helix	269	290	0.93
Cytoplasmic	291	300	0.85
Transmembrane Helix	301	319	0.95
Non-Cytoplasmic	320	326	0.78
Transmembrane Helix	327	345	0.85
Cytoplasmic	346	359	0.74
Transmembrane Helix	360	379	0.91
Non-Cytoplasmic	380	387	0.68
Transmembrane Helix	388	412	0.84
Cytoplasmic	413	421	0.81
Transmembrane Helix	422	443	0.66
Non-Cytoplasmic	444	459	0.72
Transmembrane Helix	460	483	0.85
Cytoplasmic	484	550	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHNGGGSSN GGANYVEESW MYNFCLKCRG EEPSASWEPP FWQKIFPYPL CPTFRTVSRL  60
   61 ISIILIGVLI WVTAFVIIGD SAAPGGQLFG LVVLTVAANF GGYLISLTTL PRLIGMLLVG 120
  121 ILFQNVGWAD IDGDFSKVTA HLRKFALTII LTRAGLEMEP EAFKKVYKTI LKLGIIPWCV 180
  181 EAVVMAVMSH FLLDLPWIWA FLLGSIIAAV SPAVVVPCLF RLRTKGYGVA KGIPTLVVAV 240
  241 AGVDDALSVA IFGIISTVMF SDKGLAYQIA QAPVCILGGL GFGVVWGSLA RIFPEKGDAY 300
  301 VVPLRTLLLF TGGLMAIYGS EELGFEGAGP LAVVFSAFVS NLFWCKDGWD VEDNPVSTAF 360
  361 EIFWMIFEPI LFGLTGATIK IRELDSHTVS IGAACIFTGA ILRILTTAGI AFGDRLNTKE 420
  421 KFFVGLSWMA KATVQAALGP VALKHLGDDA TEEERNWANI VQTICVFSIV LTAPLGAIMI 480
  481 SVTGTKLLTK TKQPQDLSGW RRSHRPSIRD ISIIDEEEER EDPEIPEDKE THDNTLNNAH 540
  541 IPSISYTYNT