YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_CUPMC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIALALKAV ILGIVEGLTE FLPISSTGHL ILAGQLLDFN DEKGKIFEIV IQFGAILAVC  60
   61 WEFRQRIGTV ISGLASDVKS QRFAVNVIVA TIPAIVLALV FGKWIKAHLF NPITVATAFI 120
  121 IGGVVILLAE WREARRGTVS APQGNALLEA AKAGAPRIES VDDLNWRDAL KVGLAQCFAL 180
  181 VPGTSRSGAT IIGGMLFGLS RQVATEFSFF LAIPVIFGAT VYELYKARAL LSADDLGIFA 240
  241 VGFVFAFLSA FLCVRWLLRF VATHDFKPFA WYRIAFGIIV LLTAWTGVIS WHA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	33	0.69
Non-Cytoplasmic	34	45	0.71
Transmembrane Helix	46	63	0.79
Cytoplasmic	64	82	0.91
Transmembrane Helix	83	102	0.96
Non-Cytoplasmic	103	108	0.74
Transmembrane Helix	109	129	0.92
Cytoplasmic	130	202	0.86
Transmembrane Helix	203	225	0.79
Non-Cytoplasmic	226	235	0.73
Transmembrane Helix	236	258	0.93
Cytoplasmic	259	268	0.76
Transmembrane Helix	269	289	0.95
Non-Cytoplasmic	290	293	0.63