YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91779159, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKPNKTLSN SVLTFGFLFL YIPIISLVVY SFNESKLVTV WSGFSLKWYG ALLHDGELLN  60
   61 AAWLSLKIGL LTACASVVIG TWAGFVLARF GRFRGFTLFA GMINAPLVIP EVIQGISLLL 120
  121 LFVALEQMLG WPKGRGLFTI WIGHVMLCVS YVAIVVQSRV KELNKSLEEA ALDLGATPFK 180
  181 VFFLITLPLI SQALMSGWLL SFTLSFDDLV LSAFLSGPGS TTLPLVVFSR VRLGLNPEMN 240
  241 ALATIFITTV TIGVIAVNRW MQLRERKRNR DMQMAFALAE AADPLPSAPQ QAAVRKSLDT 300
  301 ARA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	32	0.92
Non-Cytoplasmic	33	65	0.89
Transmembrane Helix	66	86	0.93
Cytoplasmic	87	97	0.71
Transmembrane Helix	98	124	0.78
Non-Cytoplasmic	125	136	0.82
Transmembrane Helix	137	158	0.90
Cytoplasmic	159	178	0.85
Transmembrane Helix	179	202	0.82
Non-Cytoplasmic	203	240	0.71
Transmembrane Helix	241	261	0.93
Cytoplasmic	262	303	0.76