YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68194171, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKKAVIPA AGLGTRFLPA TKAMAKEMLP IVDKPTIQFI VEEALKSGIE DILIVTGKAK  60
   61 RPIEDHFDSN IELETNLSEK GKTELLKLVE ETTDVNLHFI RQSHPKGLGH AVLQARAFIG 120
  121 NEPFVVMLGD DIMEDEVPLT QQLIDDYERT HASTIAVMQV PHDETSKYGI INPGEVLEDG 180
  181 LYNVKNFVEK PDPSKAPSDL AIIGRYLLTP EIFDVLSEQQ PGAGNEIQLT DAIDTLNKTQ 240
  241 RVFARKFTGK RYDVGDKFGF MKTSIEYGLT HPEVGAPLRE YILSLGKTLE AEGSKIDHNP 300
  301 KGITEIKEEK KK

Type	Start	End	Confidence
Signal Peptide	1	25	0.88
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	312	0.99