YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48833002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRQRKHLW HGALFMLTGL FMLGGYVVVG PDGGKVVEQF HLWTAVAVVL ILGGGVMMLR  60
   61 GRRWFEKESV ALEYYDAIVV ALGFALLIRT FVIEPFKIPS GSMIPTLLVG DYLFVNKFAY 120
  121 GYRIPYTQNR ILMGDGPQHG DIVVFKFPMD PSKDYIKRIV GLPGDRIAYE NKRLYVNGKP 180
  181 LDYKIAGEYS YLNEYERRID TLGLQENNGE RSYRVLIQPN VPSAFPMEQV VPEGHYFAMG 240
  241 DNRDNSNDSR YWGMVPAFRL VGRATRLFWS WDHVEGRVRF DRVGDAIR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	39	0.91
Transmembrane Helix	40	59	0.96
Cytoplasmic	60	71	0.84
Transmembrane Helix	72	93	0.89
Non-Cytoplasmic	94	288	0.68