YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110637661, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	256	0.99
Transmembrane Helix	257	279	0.89
Cytoplasmic	280	285	0.73
Transmembrane Helix	286	305	0.89
Non-Cytoplasmic	306	310	0.83
Transmembrane Helix	311	330	0.93
Cytoplasmic	331	345	0.72
Transmembrane Helix	346	365	0.89
Non-Cytoplasmic	366	389	0.88
Transmembrane Helix	390	411	0.92
Cytoplasmic	412	441	0.95
Transmembrane Helix	442	462	0.92
Non-Cytoplasmic	463	477	0.80
Transmembrane Helix	478	502	0.88
Cytoplasmic	503	510	0.80
Transmembrane Helix	511	528	0.90
Non-Cytoplasmic	529	543	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHLLYITLL FWGSLVSGSS LQKDSLSYFV HASISGNDSI KQLSVKRLVE SGNTDVYPFL  60
   61 AAVYDKKIYL FKDQPVTTGV RTTGEDGTDF YEVYTLYPVN APVKDGAGVI ILQPISKLKE 120
  121 VTFGRSERLL IGQLGPYLNL SSADAEKRKA AYGQFQALKD KEALPALYAA RAKETSSDVK 180
  181 SIAQETIFSI ELNASADDNR KKILIDSLVI NWGSNTESIL EAYEASEKNP ELKAYAKAAI 240
  241 ADLNGKHERL SVVQNLFSGL SLGSILIMVA LGLSIIYGLA GIINMAHGEF LMIGAYTTFI 300
  301 IQSLLPKGDL FFWISLPVSF LVAGAFGFII ERLIIRYLYS RPLESLLATW GVSLVLIQFA 360
  361 RTLFGDLTAV RTPAVLSGGW EITSHLVLPY NRLFIIGLCI FMIAITYYTL YKTRLGLRVR 420
  421 AVTQNRNMSS CLGIETGKVD AITFFLGSGL AGTAGCAMTL IGNVVPDMGQ TYIVDSFLVV 480
  481 VTGGVGNIAG TIVSGFGIGF IFKILESFFE AVYGKVLILA IIILFLQFKP KGLFPDKGRI 540
  541 AED