YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA_SACD2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	48	0.95
Non-Cytoplasmic	49	55	0.82
Transmembrane Helix	56	78	0.91
Cytoplasmic	79	97	0.92
Transmembrane Helix	98	119	0.92
Non-Cytoplasmic	120	124	0.74
Transmembrane Helix	125	143	0.87
Cytoplasmic	144	150	0.77
Transmembrane Helix	151	169	0.93
Non-Cytoplasmic	170	176	0.79
Transmembrane Helix	177	198	0.88
Cytoplasmic	199	218	0.87
Transmembrane Helix	219	237	0.82
Non-Cytoplasmic	238	243	0.70
Transmembrane Helix	244	264	0.89
Cytoplasmic	265	275	0.77
Transmembrane Helix	276	297	0.82
Non-Cytoplasmic	298	299	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATRKSTRP SKPLKATLVA YAKLMRLDRP IGIYLVLWPT LWSLWIAADG LPDWDVLVIF  60
   61 VLGVVLMRSA GCVINDFADR KIDGHVRRTA NRPLVTGLIT PKQAVLFFVA LLVIAFILVL 120
  121 FTNPLTIKLS FGGALLAFCY PFMKRYTQLP QIVLGAAFAW SIPMAFAAQT NQLPEAIWVL 180
  181 YTAVVLWTVA YDTFYAMADR EDDLKIGVKS TAILFGDQDR IITACLQLMA LVAMAMAGER 240
  241 FGLGFSFKVS LLVAGGLFAY QQYLIRNREP NACFRAFLHN NWVGLVVFLG ILVDKLITN