YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48892462, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSLFKKTL RIFLKKNFPI TKPQKSNYQI VSQWFKWLAP GLFVKRWLLL SAAGVLLTSL  60
   61 GLAIWTGMTP IFYILQTIRE FLGWVTTIVP KYISGPIIIV VGLLLIFLGQ NRSLKTITQA 120
  121 LMPEGDEQLV DRLLTHRRLN KGPKIVAIGG GTGLSNLLRG LKSYSANITA IVTVADDGGS 180
  181 SGRLRREIGV LPPGDIRNCL AALANEEKLL TELFQYRFKA GDGLVGHSFG NLFLTAMSEV 240
  241 TGDLERAVAA SSKVLAVQGQ VLPATLTDVY LWAELADGRH IEGESNITEA GGKIVKIGCT 300
  301 PEHPPALPKV LQAIEEADYI IIGPGSLYTS VIPNLLVPEI AEAIACRNIP SIYVCNIMTQ 360
  361 PGETTGYSVA DHICAIDVAC GQRLFDTVLV QGKSPSAQAL IKYAQENSHP VFLDREAVNN 420
  421 LGRKILLTNV MYEDEQNGFV RHDSTMLAQV LFQWYSGS

Type	Start	End	Confidence
Cytoplasmic	1	46	0.84
Transmembrane Helix	47	68	0.90
Non-Cytoplasmic	69	87	0.77
Transmembrane Helix	88	109	0.89
Cytoplasmic	110	458	0.67