YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71677069, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTMGKVFW KQPLTYLLLL AGAVGALLGE RLILQTSSSP ENSSQLTELS VTQSLSKTDN  60
   61 TSNSEKSTWL PVRAPISNSN FIVNAVQKVG PAVVRINASR AVSQRPNMYG FRVPEDFYGF 120
  121 ELPRSRNSPI EQGTGSGFII SSDGNILTNA HVVEGSTTVE VVLKDGRRLQ GKVLGTDSLT 180
  181 DVAVVKIDAG SLPTVKIGDS NNLQPGEWAI AIGNPLGLDN SVTVGIISAT GRSSNDVGVP 240
  241 DKRVGFIQTD AAINPGNSGG PLLNQNGEVI GINTAIIDGA QGLGFAIPIN NAQQIAKQLI 300
  301 KVGKAEHAYL GIAMQTLTPE LKQELNRNFN TNMFSDQGVL VIQVVPGSPA DKSGLKPGDI 360
  361 IQRIDNQTIT TSENVQQIVQ NKTVGSLLEL EINRNGKSLN LDVRTGNLPP RRFRG

Type	Start	End	Confidence
Signal Peptide	1	29	0.71
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	415	0.99