YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71670538, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFVLASITS NIVGSIFLLT GIAKVIEPWK FAQHITKLNL VNPKLIIPVA LTFTAIESAL  60
   61 GVALILGVFL NLIILVSILL LFGLSILTYW STSTGKTTDC GCYNGLFEIT PTQSLILNAI 120
  121 YIFLLIFAEF FGKYQPTIFW QWLVVLITLI TSYALAAGSL EYIQENGRPY IDFTPLQENR 180
  181 MWQIEWLGED SKSLMSGSVI VVFMSPECSQ CKHWLSLLKL AQLQDNLPAI VGLIDTENLQ 240
  241 IGQNFVDRYF LNFPVVAVDK RLYKKLKIEV VPTAVLLKDG VIQQRWIGLM PMWFINKINQ 300
  301 G

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.60
Transmembrane Helix	7	26	0.84
Cytoplasmic	27	44	0.72
Transmembrane Helix	45	66	0.73
Non-Cytoplasmic	67	67	0.38
Transmembrane Helix	68	92	0.79
Cytoplasmic	93	108	0.56
Transmembrane Helix	109	131	0.81
Non-Cytoplasmic	132	137	0.57
Transmembrane Helix	138	160	0.89
Cytoplasmic	161	301	0.65