YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83589638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMARDLATVG RRRRQVQMPA YRSRPDWPGA GGFHRAGPVE QGTGFALEEA TAVESNGRGT  60
   61 PPAVRQPLWP LVLGGAALLA GLVLGLRPAL AQPVPVPQVN LNLAQTTDPR QVVDTVRLLI 120
  121 LLTVLALAPA LVLLMTSFTR IIVVLSFVRS ALATQQTPPN QILIGLALFL TFFIMAPVYN 180
  181 QVKTQAIDPY LAGRITQEQA LAAGARPVRE FMYRQTREKD LALFVHMSGM AQPRTRDDVP 240
  241 LHVLIPAFII SELKTAFQMG FLIYIPFLII DLVIASTLMA MGMFMVPPVM ISLPFKLMLF 300
  301 VLVDGWYLVV KSLLESF

Type	Start	End	Confidence
Cytoplasmic	1	67	0.87
Transmembrane Helix	68	90	0.87
Non-Cytoplasmic	91	118	0.79
Transmembrane Helix	119	144	0.83
Cytoplasmic	145	159	0.71
Transmembrane Helix	160	179	0.82
Non-Cytoplasmic	180	259	0.62
Transmembrane Helix	260	286	0.79
Cytoplasmic	287	288	0.38
Transmembrane Helix	289	310	0.74
Non-Cytoplasmic	311	317	0.42