YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60465639
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	66	0.85
Non-Cytoplasmic	67	78	0.71
Transmembrane Helix	79	102	0.88
Cytoplasmic	103	121	0.89
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	158	0.87
Transmembrane Helix	159	180	0.92
Cytoplasmic	181	187	0.82
Transmembrane Helix	188	207	0.95
Non-Cytoplasmic	208	227	0.85
Transmembrane Helix	228	250	0.87
Cytoplasmic	251	264	0.84
Transmembrane Helix	265	287	0.89
Non-Cytoplasmic	288	317	0.80
Transmembrane Helix	318	340	0.80
Cytoplasmic	341	368	0.78
Transmembrane Helix	369	389	0.83
Non-Cytoplasmic	390	398	0.62
Transmembrane Helix	399	415	0.67
Cytoplasmic	416	422	0.86
Transmembrane Helix	423	446	0.84
Non-Cytoplasmic	447	452	0.83
Transmembrane Helix	453	475	0.93
Cytoplasmic	476	602	0.95
Transmembrane Helix	603	626	0.85
Non-Cytoplasmic	627	638	0.70
Transmembrane Helix	639	661	0.90
Cytoplasmic	662	681	0.81
Transmembrane Helix	682	703	0.86
Non-Cytoplasmic	704	718	0.89
Transmembrane Helix	719	740	0.92
Cytoplasmic	741	747	0.82
Transmembrane Helix	748	767	0.95
Non-Cytoplasmic	768	787	0.87
Transmembrane Helix	788	810	0.87
Cytoplasmic	811	824	0.86
Transmembrane Helix	825	847	0.90
Non-Cytoplasmic	848	871	0.93
Transmembrane Helix	872	895	0.92
Cytoplasmic	896	914	0.95
Transmembrane Helix	915	936	0.93
Non-Cytoplasmic	937	952	0.89
Transmembrane Helix	953	976	0.87
Cytoplasmic	977	985	0.92
Transmembrane Helix	986	1009	0.86
Non-Cytoplasmic	1010	1015	0.89
Transmembrane Helix	1016	1038	0.93
Cytoplasmic	1039	1054	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIENSNIVN FQKEGVIIEN KGIHLSHEED GDLLNNGLKK NTIGVIECIA LSVGGIGLSA  60
   61 STFFVFPNIA ASAGTSVPFT IFIGALCCLT LANTISIFGK YISSSSSFFV YITKGLGNEM 120
  121 GFLSVWVLII GYLTNLISGM LMFVGSLSDV ITRHSDFNCP WILCLLIVVT IIPTLAYIGI 180
  181 DVVLKTSIIA MILETLVMLV LSLAIVIKGG DQGNYPLAFT PVGEYSGGIS GIATGLVYCT 240
  241 FIFIGFEGAA TLGQETRNPK KNIPIAVFGS IAFAAAWFTM SMYSLVVAVG PSNIFSINTS 300
  301 QFTVGVYAER YIGFWYSVII DITSVVSGYS VISSWFNIVF RIIYSIGKTK EKGIISWFGR 360
  361 TNQKFKTPHN AIISLTGFII LISAIIIGST KNIYTESSWE VYDYISFTVI RYVKVYQSKD 420
  421 FQLFRHMILP IFSAILFTVI LGGNFYPPPY YPIPYFLIGL GILLLMGVCV MFFLYRFNKE 480
  481 YLKNMLCQMS LKFFLLLFYL EKKTKIQFAN FIITQKKVFF SASKLKNYLE IINKKKINRS 540
  541 IGSQCVNYFI FYLFFFFCRK MGIENSNILN FQKEGVIIEN KGINSSNKEE NDLLYNGLKK 600
  601 NTIGVIECIA LSVGGIGLSA STFFVFPNIA ASAGTSVPFT IFIGALCCLT LANTISIFGK 660
  661 YISSSASFFV YITKGLGNEM GFLSVWILMI GYLANMMGSM FMFVNPLSDV ITRYSDFHCP 720
  721 WILSLIIVVT IIPTLAYIGI DVVLKTSIIT MILETLVMLV LSFTIVIKGG DEGNYPLALT 780
  781 PFGEYSGGFS GIATGLVYCT FIFIGFEGAA TLGQETRNPK KNIPIAVFGS IAFASTWFIL 840
  841 AMYSLVVAVG PSNIFSIDTS QFTVGVYAER YIGFWYSVII DITSVVSGFC VISIGKTKEK 900
  901 GIISWFGRTN QKFNTPHNAI ISLTGFIILM SSIIVGSTKN IYTESSWEVY DYISFTSTIP 960
  961 VILIFIITNI AVIRFVKVYH PKDFQLFRHM ILPIFSAILF TVILGSNFYP SPNYPIPYFL1020
 1021 IGLGILLLMG VCVMFYLYRF NKEYLKNMLY QMSL