YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCFG_DICDI
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNNKDSQL MIALKDIVAG SIGGVGQVFT GHPLDTIKVR LQTQSVGNPI YSGTMDCLKK  60
   61 TISQEGFAGL YKGVASPLVG LSIMNSVMFL AYGQSKTLIQ KLSDNPNEAL DLKGLTAAGA 120
  121 LAGIAIGFVD APVDLFKSQM QVQQGDKNQY KSTADCAKQI WKVGGVRGVF QGLGATLVRD 180
  181 IPANACYFGA YELCRDFLAS KDNISVNQLS SLQIMAAGGA GGVSYWTLTY PADVVKSTMQ 240
  241 TDAIVKSQRK YKNMIDCASK IYKQQGIAGF YKGFTPCFIR SVPANAACFV LYEKARQIMS 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	11	0.74
Transmembrane Helix	12	31	0.49
Non-Cytoplasmic	32	72	0.68
Transmembrane Helix	73	93	0.74
Cytoplasmic	94	111	0.53
Transmembrane Helix	112	131	0.59
Non-Cytoplasmic	132	300	0.74