YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468494
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.53
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	78	0.88
Transmembrane Helix	79	98	0.94
Cytoplasmic	99	104	0.71
Transmembrane Helix	105	125	0.85
Non-Cytoplasmic	126	140	0.74
Transmembrane Helix	141	158	0.89
Cytoplasmic	159	168	0.85
Transmembrane Helix	169	193	0.89
Non-Cytoplasmic	194	268	0.61
Transmembrane Helix	269	293	0.89
Cytoplasmic	294	316	0.70
Transmembrane Helix	317	336	0.75
Non-Cytoplasmic	337	340	0.65
Transmembrane Helix	341	361	0.88
Cytoplasmic	362	374	0.88
Transmembrane Helix	375	395	0.92
Non-Cytoplasmic	396	406	0.79
Transmembrane Helix	407	429	0.93
Cytoplasmic	430	447	0.89
Transmembrane Helix	448	467	0.88
Non-Cytoplasmic	468	497	0.84
Transmembrane Helix	498	517	0.79
Cytoplasmic	518	687	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTVFFSL AILLVILFNQ ILEIKSEATT TTSLTISTSN EGSSSTSNKF IVKGEENEYE  60
   61 NEGGECKDNI GCGRNASRLI LSFLFLILLS MLVIYVLTRI NIHYIPESLA VVVYGIIIGI 120
  121 IIKYSNVDTF KHLASYNPNE FFLFILPLII FETGLTLNKK EFFRNIKSIL VLATIGTLIA 180
  181 FLLTGFGLYL LGIWGVSPKI TLFESLLVSS ISSATDPVAT LGIFKVLDVD PTLFLIVLGE 240
  241 SILNDAVSVI LYDSVLQYDN IKELWKPVLL FFGISIGSVI IGVLISIILT LLLKFTTIKF 300
  301 TTTTNTTNTT TTDATSSTFR LFEIIFIIII SYSSYIIADS IYLSGILSSF FCGITSSHYL 360
  361 YKSLSDETKQ SISQLFRMIA FIGETIVFIY IGLVLPNFNF QFNIKLLVWT FLLLLISRAI 420
  421 SIFPTFFIIN KLNNKNKLNN NKNNNNGGGG GNMVSIGIQI VIWVSGLRGA ISFSLMEESE 480
  481 IQENVSSIES ANLLKTDILM IVYSTLFIFG SLTYPILKLL KIKTDVSSTI NKDSQDNDDS 540
  541 SVDDSSGGSD SNKLLKNFKQ RSGALYRVFK YLIYLDNFLL NFFSNKKGLS PRMKSSISSS 600
  601 FKCDNDDKNI GGDGNNRNSI QLETFNNRHF SFNKDDEDYY DDNQTQNESN SGRELLFTMD 660
  661 SENETTTSTT TAHDNKNNKN NNNNDDE