YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGMC_DICDI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFRNNLTLY LIFIIVFTIY ISLTISIPLK NGKFWHITDT HYDFMYIEGG DEDKQCREVT  60
   61 YKSKYEKGGA SSIGNYKCDT SFELLQSSFE YMVKHEEKPD FIIWTGDDPP HLGNSQLNET 120
  121 LVLQSITNMT NLIKGYFPDI PIFPSIGNHD SYPQHQIGVG PNWLFENVAQ LWSPFLSNDS 180
  181 IETFKLGGYY TELVSEGFRI ISLNTVFYYN ENRQCLNLTD PAGQLLWLNE TLANASLAGE 240
  241 RVWIIGHVPP GYNEKYDVFN FHKQFNDEYL FSFSQYSDII EFHIYGHEHT DTFRLFYDDP 300
  301 NDHINDIEPT GIMFLSPSLT PWMNQFLPAL PNNPGLRLYE YNITSFALLD YYQFWTNLTD 360
  361 NIISGNIDWQ LEYRATEFFN TFNLSPVSMY EAYLLIQSVT SQLLKFHFYN SVSYPTKGCD 420
  421 EICKKIQLCS IRHPFTKGFK ECLVEI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	27	0.91
Non-Cytoplasmic	28	446	0.96