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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60469708
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.65
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSHPSTPP LTFSTSTPLP TTTGQISSSS NISTTTATTT TTCSTPISTN NINNPISVNY  60
   61 ISPIQQNKPY TKIFWPNRCT DQKSGYLIGL NTRSFVVCVV DIVTDVPLNE LEVILNKMKF 120
  121 DRRMLGCPLG YTPRILGEWI GKDKNIEIPL PPKNLQESDI WISMERTESG DPYLRKIYCN 180
  181 EYKIQTSSQL VMYDDTPPYY YTSIPIKFES MLSLVSKGNK SSLSSSNSSK ITKTNNSVFA 240
  241 PSSSSSSSSS SPNDPPSPNS SKKQIGSELE STFKQINCSY DIKTILQETI QKHFQFKLLR 300
  301 QQKLEELQRQ EQEQKLAQRQ QQQQQQSRDN QTKDSDTDTE PQSFFSKTLF TLRFRKNNNN 360
  361 NSNNNNNNNN NNNNNNNNNN NNNNNNNNNK KLEQDNKMKT SPPISTTNNI SPSKSNANNN 420
  421 INNNNNNNNN NNNNNNNNSN NRNQEKKTIK DILYRPIYFF IWFVQIFSRL LERILYISTP 480
  481 FIYSGCKLKD ITTFGTHLDN RIFQVKQLSK QWESLKKKTY WINNNDDRSS YIEFHNSAWL 540
  541 IFNDILLGIG AGLLLNFFSG HVLDLIGKLN FFLNNDMLKS LILWLMGWPG GFKLNENLDK 600
  601 FFGRLILYYI DKWNLITTTI SPHGELFLQI VCLSGIMGLS FLISVVIDLF YIFTLHISVF 660
  661 YSVSARFYLL QMLLLKSLWN LFRGVKFNPL RKRTDHCDFD VYQLLLGTLL FTLIFFLFPT 720
  721 TAIYYFFFAV FKSGVSLVMA IFALLLHFLN TFPLFNLVVF FIDSRYLPGG VIFDFKKKDM 780
  781 VTIQNNFNIS DQHDQLQDHS QLIQQSDQDE QQQSQQQQQQ QQQQQQQQQQ QQQQQQQQQQ 840
  841 QQQQQQQQQQ QQQQQQQQQQ LHNINSPILP TCNNSINNNN NSNINNNNNN NSLSSPPIIQ 900
  901 HVRNLSGTLI SNSNGLNSST NSHKRNLSQS SASPIPRIST QLEITYFSIK IKPANLSTFF 960
  961 LPTIQLIQNT VSTYHPLKLS KCFFMGKPLN KI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle