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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GCA_DICDI
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.04
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFGNLPDVR KPKEGYKKYL EYFDLRFPRI QEEKHFQSYY YYTYLKQIRI SIIFLTSVLF  60
   61 IGTMTAYISP LDISYLPYYD SKNIYYFNYV QPNVTTTSSS TTTTSSTTNS IDSTVENNNF 120
  121 TEADGHLTNY YFPYLANKAR DTFILRMITI GLLLFYFIFT FTAKFKRLWK LFTTITLFLV 180
  181 SCIVLIFESD IRTIPGRMVL LFIIIAISSG MTFLPSMLAS GGLCLFFFFY FMFYSQIAGK 240
  241 QMVLLSLVLL ISWIILMIIS RFKEQLFRDK FRTLENLKIQ TIRSEKIINQ MLPTVVVQRL 300
  301 RLQSSKDQSL ETTLENDKEL SIKKDEESNL TGKKQSKVVV SPPPPPTAAA PQQQDNEIST 360
  361 PQNSRKIVDP QSPSSLMPGQ YSVTDLIVDS YDPVTVLFCE IVNFNALVEK MSSTQVINLL 420
  421 NEVYNSFDRL TDVYGVTKVE HIGNVYMVVG GCPELCPDHA QRVAHMSLGM LSVIRRFGIV 480
  481 QVRIGMHTGP VVGGIIGKKK LSWHLFGDTI NTSSRMASHS SIGRIQVSHP VQQLLRPYFL 540
  541 FEDRGKIQVK GKGLMRTFYL VKTKQLDKRY TSIFSSLHRE KPYIPPVDIS EVSFENQNNT 600
  601 IGKGDDIASG SATGPTHPNI PNSMLSAIPS RVSIEMNPLG GSGSIQKRER KGSIFANVMP 660
  661 PKVLNFLQTG SLTSPQQQPL PQQSNSEETI SNSPRLSSTP QSTSTLQHSS STGALGSLIN 720
  721 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNLPVSL ISPISQNTTP 780
  781 TGSLSLPVTE KKKQTVQFGS ISRSSSISKG TVGRSPSPAL FDGGIEMDDN GGGAGDDFNT 840
  841 MEPNLDLGKG IHGSNVISTN NSKLNKLEKD LTKHYTLDKF KLSFISRGNL VEKEYRNEYI 900
  901 LKNWNRILAS MLMIVALFGL SGLVDYFFLK LSSISSIVKV EPMPSSSSSS LSSSSSNSMT 960
  961 SSEEKFITLH TIRSEENLIY DIITGVRYGF VFFCLIVIYV VSKFKTFSIR KWIQEVVMVF1020
 1021 FIVLAAVLIV LTSVPPLNKI PLDSVILSIE IMFITICYNF SGIKFWYSNI VCAFCIIFIE1080
 1081 ISKTWKQAYH SRDIYLSHNY YLITAVLINI ITSYFEELFN RLNWVHGRLL DKDQRETESL1140
 1141 VAEILPADIV KSMKSGRQLI VDEFKNVTIF LSDIVGFTEM AARMSPRQLV ETLNQIYSTF1200
 1201 DEIAQEFGVL KIATIGDAYF CVSGCPDKDQ TDHAFRVANM AIKMLESIKS IRTVDNIPIR1260
 1261 MRIGIHTGPV IAGVVGIKMI HYQLWGESVQ ITQQMESTSR ADMIHVSEDT FNILKSKYLF1320
 1321 EERPDGIIKK RKIKTYFLLR ALTENDPQPE VKTRSVSVSK SNFGGSLQYN QITPTLNLPV1380
 1381 SQLIIKDQNE IKNQNDHDND DENGNENGNE SSSSNINEEE EDDDNSNNNN NNEDDESSYE1440
 1441 DDQEMNQYLN NSENNKNNNN NSNQINEEDG NWAKNYDGSS ESS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle