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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptr-18
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSISQCLGN VSLWIEQQTH DMFYWVGLKI ADYPKWTLFI TTIWALLMAG GVVRFKEVNN  60
   61 VRDHFSATNS PSRYEYRVAR EFFQELGSPF HVVVAMQAAD GGSLLRPKYI DKALEIEDFL 120
  121 QYKLKGSFGN QSYSYSDFCG TQCETSDAVS IFLSMFRDQQ IKKTAHVKLT YPSMDVFGHR 180
  181 VYLANNIFQV KINNRSSIIE ESKLVAINFH AIYNNETMYE IMKEWEQKLF AYTLSTENDP 240
  241 LIRVYVTSEG LVSEEVRRTG ILAMPLMGVT FLIILAFTIL TTLKRDPVKS KPFEAFLGVI 300
  301 CPILSLCASF GHLFWMGFEY LPIVTVVPFL ILSIGVDDVF IFIHAWHRTP YKHSVRDRMA 360
  361 ETLADAGPSI SITSLTNLLS FAIGIFTPTP AIYTFCVFIS TAVIYDYIYQ IFFFSAVLVL 420
  421 SGEREEQRKN AYLWWKDVPL PEEPTGKQKK ETIVSRVLGK VLDFWVDFIM AKWSKFLIGA 480
  481 IMITYWIFMA RGVMEIAVGL SSEKLFLDDS PLLPLVRLQT NVIFKEGGQV AVFVNNPGNM 540
  541 SEPDAVPEIM RILRRFEVAN NSVGAASTHM WLLPYLPYVG EQEHGSIEFK YRYLPEFFKL 600
  601 TEFRRWSHFV NLGNHQDCLS EKPSCLQKFV FSTGFHDAVS WSDRLALLEN WREMASEYQH 660
  661 LNLTIYEDFS MYSDQLLTIV PVTQSTVFCA LICMIMILTL FTPSPVTIVT STAAVLSINL 720
  721 GVFGCLVYMN IDLDPISMTT LLMAIGFSVD FVAHITWHYY KGDFHSKRAR IRHALAGIAW 780
  781 PMFQAGTSTM LAITVLALVH AYMVQVFVKV VVLVIFLGMF HGLVVLPIVF SALPFTKTSG 840
  841 PQKKKVAPLQ MHEAGPIPKK EEPKVIKVNG EEDEEDEKTT KEEPVEKSVR SAERA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle