YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-35
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSTETLLA ARTSLLYRGN ALFQISICIL TLYFSGKAFK VLYRRSVFHI STHQLLFMSI  60
   61 VYADFHAISY GFLQAISLYR SVVFYDDPVM IMFTGYECYA ITWTVGAAKM LMSFIQTALT 120
  121 IERIIDRIIP LVPKLKPFKR QGLFLNAFAL TAGISTTIYS YSEGPTGYKL ASCFMQKDIP 180
  181 LDRVLYTLGM YFALSLLCLL ANLTIIFSIF KSSKKSFNLK IRFNFQEVKN SSFAVSLISV 240
  241 FQFVAMTAYV ASSLIVIYYR RDIPHEYFHN IILCIYTIPY GGLCLPLSVI YCTKWISDHR 300
  301 KIQIVQMTNT NRTETMDGRM SQLKNAWDSL APSTPTKKY

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.85
Transmembrane Helix	16	36	0.80
Cytoplasmic	37	54	0.69
Transmembrane Helix	55	76	0.78
Non-Cytoplasmic	77	98	0.86
Transmembrane Helix	99	121	0.86
Cytoplasmic	122	141	0.95
Transmembrane Helix	142	161	0.95
Non-Cytoplasmic	162	188	0.94
Transmembrane Helix	189	210	0.94
Cytoplasmic	211	230	0.94
Transmembrane Helix	231	252	0.90
Non-Cytoplasmic	253	270	0.78
Transmembrane Helix	271	292	0.91
Cytoplasmic	293	339	0.96