YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-43
Protein type:	Transmembrane
Type Confidence:	0.45
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYIYYLFLF LTVRVFCDSQ DSDIQGKKVL IFLPVSGYSH VKFLSTVANI LQDEGYNVTL  60
   61 LLPLIDITLN NTNIPIVKKI KHRINLDIHP GVMRTIIKMG GMASRRQTWT MGSGIYGFDG 120
  121 ISHLLSDLYS NICDNIFHMP GLLDRLKAEK YEMGMSEPFF VCGFALFDHL GIDKIISVDS 180
  181 HIGLEGPKIA HGFPVTSSYL PAAFSESSDH MSFVERTRSL YETYLNRKFA RLIHNKEIDA 240
  241 MKGVYKGKST WEELMRLPAY MFTNSNPILD FPYPRPSKFI EIGGIAADEK KHDEVLPESY 300
  301 DHILNLRNRT VLISFGSNAK SIFMPDHMRR SLIIALGMMP DITFIWKYEN SSIDIVKEFD 360
  361 PTIKNIVQVD WMPQQALLAD PRLDLFVTHG GMASTNEIAF SGKPAVMVPV FGDQTRNSRM 420
  421 LERHGGVLML RKENLEYPEI VIETILSVLN DPSYAERAQQ LATLLRNHPE SPKQVFLKYF 480
  481 NFVARFGKPT GIDSNSINVD FIAYYYLDLI AFLLIVAYFA KFLVSHVYSY FCYLRKEKAE 540
  541

Type	Start	End	Confidence
Non-Cytoplasmic	1	503	0.95
Transmembrane Helix	504	525	0.72
Cytoplasmic	526	540	0.70