YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-36
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVETNMKL LFCLFFALCS DSYNFLVFCP LFGHSHTTFF AKIADTLTYA GHNVTFFTPT  60
   61 IVRKFSKIQY VKSITHVLQL DPSDRLVKLG SMFEEKDVSK FWYRDSSLSE MLPMIDTFNN 120
  121 MFVEQAAVIS RNLHVLDDLK EMNFDVMIFE HFVEPAYLVL DYLEIQKFIP ATSLAFDYNM 180
  181 VKSIGEPLML STVPLPTSEY SDRMSLPQRL INAINPLIFD NLIPKNKYRS YRPPYAPINT 240
  241 KSIEPFCSAV FTNSNPYIDY PRATLEKNVQ VGGISVDIDK LKSQKVSNEW DAVLNLRPKT 300
  301 VLVSFGSIML SKDMPINNKI TIATVLGKFP DVTFIWKYET NDTSFANGTE NIHFSNWVPQ 360
  361 TALLADPRLS AFFTHAGLGS VNEVSYLGKP TIMCPIFADQ MRNAKMLARH NGSIEISKYD 420
  421 LSNGDKIEEA LSKILFDESY KTAAEKLAHQ LANQPVKPKE LLVRHAEFAA QFGHLPSLDP 480
  481 HSRQMSFIQY FLIDLTAIIL STVILFLFVL FKLGKLMYSK LPFNLSLVKQ KTN

Type	Start	End	Confidence
Signal Peptide	1	22	0.68
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	489	0.99
Transmembrane Helix	490	511	0.95
Cytoplasmic	512	533	0.95