YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-34
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSYWHFSL FLLHLLPQLT LSYNYLVFCP LFAHSHHKFL AKIADTLTEA GHNVTFLMPI  60
   61 IHREYENVKY LEHTTDIVYI QPDKELEEIA QNADYSTFWK NDFGILTFIP AIERFFRMFT 120
  121 KVHDILKKDL SVLDNLKNRK FDAMIFESLA FCAHPIREYL EIKTIFPSWS MTHMTELSQA 180
  181 IGEPSSPTFL PITISPFGDK MTFKERLLNT LADFTFTHIF QPPTLTSFKY PHQTFDFKEI 240
  241 LSQAPFIFFN SNPFLDFPRP TLTKTIEIGG ISVNATLMRL EKLPEEYNTI LNLKQQNVLI 300
  301 SFGSMLRSSE MPVEYKDTIA QVVRSFPSVT FIWKYENNNV EFAENLPNFH FFKWVPQTAL 360
  361 LADSRLSAFI THAGLGSINE LSYIGKPAIL VPIFADQLRN AKMLVRHNGS IELDKKDLGK 420
  421 FDVLRDAVDA ILNDKSYTNN AILLSQQLES QPFSPHDLLV KYAEFGAKFG ELPSLDPHYR 480
  481 KMSFFSFFMI DIILFLTATF AIFVSISLYL FRVFFKSVFV RKEKIN

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	491	0.98
Transmembrane Helix	492	511	0.96
Cytoplasmic	512	526	0.86