YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Nplp1-PB
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVLQSAHS SRRLMLLLSM LLNAAIQPRS IIVSATDDVA NVSPCEMESL INQLMSPSPE  60
   61 YQLHASALRN QLKNLLRERQ LAVGEEQPLG EYPDYLEEDK RSVAALAAQG LLNAPKRSLA 120
  121 TLAKNGQLPT AEPGEDYGDA DSGEPSEQKR YIGSLARAGG LMTYGKRNVG TLARDFQLPI 180
  181 PNGKRNIATM ARLQSAPSTH RDPKRNVAAV ARYNSQHGHI QRAGAEKRNL GALKSSPVHG 240
  241 VQQKREDEEM LLPAAAPDYA DPMQSYWWYP SYAGYADLDW NDYRRAEKRF LDTSKDPELF 300
  301 GIEHGNDATT AEPADEAYME SDAEAGSEQL PSPQKRHIGA VYRSGFLPSY RYLRSPGGSS 360
  361 GFGGAGGRFS RSGRDARQFV

Type	Start	End	Confidence
Signal Peptide	1	35	0.89
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	380	0.99