YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56238096, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENTSPTTA LISSSVAGHD CCGGFGNIDF RQADLFVMSW LLGYMDPTEP SFVAAVITIV  60
   61 FNPLFWNVVA RWEQRTRKLS RAFGSPHLAC YSLGICILLL NILRSHCFTQ AMMSQPKMEG 120
  121 LDNHTTYFLG LAFLGWGFVF VLSSFYALGF TGTFLGDYFG ILKESRVTTF PFSVLDNPMY 180
  181 WGSTANYLGW ALMHASPTGL LLTVLVAIVY VVALLYEEPF TAEIYRQKAT RLHKRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.56
Transmembrane Helix	50	70	0.86
Cytoplasmic	71	86	0.62
Transmembrane Helix	87	108	0.83
Non-Cytoplasmic	109	126	0.63
Transmembrane Helix	127	155	0.77
Cytoplasmic	156	166	0.52
Transmembrane Helix	167	184	0.41
Non-Cytoplasmic	185	193	0.52
Transmembrane Helix	194	216	0.87
Cytoplasmic	217	236	0.78