YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55777215
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDPSSALPPW PPLRPPPPLS RPPRSSGAWR PVPAGSAAGP AYDLTSFVRH HPGGEQLLLA  60
   61 RAGQDISADL DGPPHRHSDN ARRWLEQYYV GELRADPQDP TENGAVASAE TQKTDPALEP 120
  121 QFKVVDWDKD LVDWQKPLLW QVGHLGEKYD EWVHQPVARP IRLFHSDLIE AFSKTVWYSV 180
  181 PIIWVPLVLY LSWSYYRTLT QDNIRLFASL TREYSMMMPE SVFIGLFVLG MLFWTFVEYV 240
  241 IHRFLFHMKP PSNSHYLIML HFVMHGQHHK APFDGSRLVF PPVPASLVIA FFYVFLRLIL 300
  301 PETVGGIIFA GGLLGYVLYD MTHYYLHFGS PHKGSYLYNM KAHHVKHHFE YQKSGFGIST 360
  361 KLWDYFFHTL IPEEAHPKMQ

Type	Start	End	Confidence
Cytoplasmic	1	174	0.70
Transmembrane Helix	175	196	0.81
Non-Cytoplasmic	197	216	0.64
Transmembrane Helix	217	242	0.79
Cytoplasmic	243	277	0.47
Transmembrane Helix	278	299	0.82
Non-Cytoplasmic	300	303	0.37
Transmembrane Helix	304	326	0.79
Cytoplasmic	327	380	0.56